Plant MITE

SE2020713

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5915
Medicago truncatula
SE2020713
Mutator
M2
MtChr8:23253793-23253994
TAAATTACA
AGAGAAATGATATTTGAACATCCATTTAGTGATAACTT

Secondary structure and sequence

TSD TIR

5'

3'

TAAATTAC    AAA  A          T   -   A          TTGCA      TTCTCTCTCATACTCACATTACT      ----TTTATCTCTC     C     T
        AGAG   TG TATTTGAACA CCA TTT GTGATAACTT     ACAACT                       TTTTAC              TATTG TATGG 
        ||||   || |||||||||| ||| ||| ||||||||||     ||||||                       ||||||              ||||| ||||| T
        TCTC   AC ATAAACTTGT GGT AAA CACTGTTGAA     TGTTGG                       AAAATG              ATAAC GTGCC 
ACATTAAA    CTC  A          T   T   C          TAAAC      --------------------TAT      TTTCTTTTTTCACC     C     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020713

TAAATTACAGAGAAATGATATTTGAACATCCATTTAGTGATAACTTTTGCAACAACTTTCTCTCTCATACTCACATTACTTTTTACTTTATCTCTCTATTGCTATGGTTTCCGTGCCAATACCACTTTTTTCTTTGTAAAATATGGTTGTCAAATAAGTTGTCACCAAATTGGTTGTTCAAATAACACTCCTCTAAATTACA

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