SE2020715

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5917
  • Medicago truncatula
  • SE2020715
  • Mutator
  • M40
  • MtChr1:18157371-18157796
  • TTATATATT
  • TATATATTGGTTTAATTGCATGTTTGATCTCTTATGTTTATTTTAGTTTTCAAGTTGGTCCCTTATGTTTTAAAAGTTTCAAGTTGATCCCTTACGTTTTAAAAGTTTTGGTCCAAAACGTTACTCACGTTGGAATAAGTTAGTCCCTTTCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
 T      TT                                                                              A   C                 -----          C     T       G                   -   TATGGTATTGAGTTTAATAAAAAATAAAAAATAAAAGGTTTTAAACTGATTTTC
  TATATA  GGTTTAATTGCATGTTTGATCTCTTATGTTTATTTTAGTTTTCAAGTTGGTCCCTTATGTTTTAAAAGTTTCAAGTTG TCC TTACGTTTTAAAAGTTT     TGGTCCAAAA GTTAC CACGTTG AATAAGTTAGTCCCTTTCG CGA                                                      
  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||     |||||||||| ||||| ||||||| ||||||||||||||||||| |||                                                       
  ATATAT  CCGAATTAACGTACGAACTAGGGAATACAAATAAAATCAAAAGTTCAATCAGGGAATACAAAATTTTCAAAGTTCAAC AGG AATGCAAAATTTTCAAA     ACCAGGTTTT CAATG GTGCAAT TTATTTAATCAGGGAAGGC GTG                                                      
TT      -T                                                                              C   A                 GTTCA          A     C       A                   A   AATTGCAAATTTCTAAACCTAACTGTTATACCCACTATCTTGAATTGAATAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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