Plant MITE

SE2030718

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5920
Medicago truncatula
SE2030718
hAT
Hat20
MtChr4:16098756-16099494
GTGCTATT
GCTATTTAGGGATGGCAATGGGTACCCA

Secondary structure and sequence

TSD TIR

5'

3'

  GT  TAT              G  T     -AT  GTAGGGTACTATAGTACCCATCCCCATACCCGCGTTTGTAAAAAATACCCGTACCCTCGTGGGCAACAACTTTAGTGCCCTTCCCCATACCCTATGGGCACCTAAGTGCCCATACCCGCACCCATTACCCGCATTTTAACTATGAAAAAACAATAAAAAAACCCACAATTGAAATAAAACTATGATCCAAAAAATTTCAAATCAACTCATAAAATAATATGAATCGTAGTATTTAGCCAAATAAAAAACAATATGTATCGTAGTATTTTGCGGGTACCCATCAGACTTGTATCCAATTGTCATCCCTTTAGAAGTATAAGATTCAAGAAATAGTT
    GC   TTAGGGATGGCAAT GG ACCCA   GG                                                                                                                                                                                                                                                                                                                                               
    ||   |||||||||||||| || |||||   ||                                                                                                                                                                                                                                                                                                                                               A
    CG   GATCCCTACCGTTA TC TGGGT   GG                                                                                                                                                                                                                                                                                                                                               
TTAT  --T              A  -     CCA  CTACCCATAGGCATTTTTAATGGGCGTTACCCATCCCATTTAGGGGCGATAGTACCCATACCCGTACCCAGGCCCATTAATGGGCGTTTGAATTTTCCCATGCCTGTGCCCATACCCGTGATATGATGGGTAGGGGCGTTGGGCGTGTATACATAAATATATTATATTATTTATTAAATATATAATTAATTAATTAAATGGATTGATAAATTCGAATTTGGATTTGGATTTTTAACGAATAATATCATTGGATTTGGATCGGAAGACGACGCAACTTAGAAAAGTCAGACGGACGTAAAGCAACGAAAAACAATAGGTAGAGAAGGCGAAGGTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030718

GTGCTATTTAGGGATGGCAATGGGTACCCAATGGGTAGGGTACTATAGTACCCATCCCCATACCCGCGTTTGTAAAAAATACCCGTACCCTCGTGGGCAACAACTTTAGTGCCCTTCCCCATACCCTATGGGCACCTAAGTGCCCATACCCGCACCCATTACCCGCATTTTAACTATGAAAAAACAATAAAAAAACCCACAATTGAAATAAAACTATGATCCAAAAAATTTCAAATCAACTCATAAAATAATATGAATCGTAGTATTTAGCCAAATAAAAAACAATATGTATCGTAGTATTTTGCGGGTACCCATCAGACTTGTATCCAATTGTCATCCCTTTAGAAGTATAAGATTCAAGAAATAGTTACCTGGAAGCGGAAGAGATGGATAACAAAAAGCAACGAAATGCAGGCAGACTGAAAAGATTCAACGCAGCAGAAGGCTAGGTTTAGGTTACTATAATAAGCAATTTTTAGGTTTAGGTTTAAGCTTAAATAGTTAGGTAAATTAATTAATTAATATATAAATTATTTATTATATTATATAAATACATATGTGCGGGTTGCGGGGATGGGTAGTATAGTGCCCATACCCGTGTCCGTACCCTTTTAAGTTTGCGGGTAATTACCCGGACCCATGCCCATACCCATGATAGCGGGGATTTACCCTACCCATTGCGGGTAATTTTTACGGATACCCATCGGACCTGGGTCTAATTGCCATCCCTAGTGCTATT

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