SE2020721

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5923
  • Medicago truncatula
  • SE2020721
  • Mutator
  • M143
  • MtChr4:37934757-37934950
  • ATTCTATAA
  • GAGAAATGCTAGCAACACTCTCTCCAACACTCACTTTTTAATTGGCTTAAATCATGGTGGGTTTCACACTTTGGAAATGGGTTCCACTCAAAGTGGTGGGTCATACATTGATTTTATCCAATAAGAAAATGAGTGTTGAAGAGAGTGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTCTATAA   A        --------------           C         C     A     CTT      TG   GGT     -       AAA   G
         GAG AATGCTAG              CAACACTCTCT CAACACTCA TTTTT ATTGG   AAATCA  GTG   TTCAC ACTTTGG   TGG 
         ||| ||||||||              ||||||||||| ||||||||| ||||| |||||   ||||||  |||   ||||| |||||||   ||| T
         CTC TTACGGTC              GTTGTGAGAGA GTTGTGAGT AAAGA TAACC   TTTAGT  CAT   GGGTG TGAAACT   ACC 
AATATCTTA   C        CCTGTGAGAGAAAA           A         A     A     TAT      TA   ACT     G       --C   T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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