Plant MITE

SE2010724

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5926
Medicago truncatula
SE2010724
Tc1/Mariner
St18
AC151525:24702-24991
TA
TACTCCCTCCGTTTCAAAATGAGTGTCGCGTTAGC

Secondary structure and sequence

TSD TIR

5'

3'

                                G     CAATTGCACACAGATTAAGGAATGA   --  AATAATCATTAGAAATAACACTTTTACTAAACTGCCCTTGTATTATATGAAAAAGACAAACTTAAAGTTGCATTGAAAATTGTGTGAGAA
   TACTCCCTCCGTTTCAAAATGAGTGTCGC TTAGC                         AAT  GA                                                                                          
   ||||||||||||||||||||||||||||| |||||                         |||  ||                                                                                           
   ATGAGGGAGGCAAAGTTTTACTCACAGCG AATCG                         TTT  TT                                                                                          
ATG                             A     -------------------------   TT  TTAACAAAGTTTTACTTACAGTGAAATGTAAAGGTTATGTTGAAATTAAAAAAAGAAGGTTGAAATGGGAGTTATTTATGAGGTTGAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010724

TACTCCCTCCGTTTCAAAATGAGTGTCGCGTTAGCCAATTGCACACAGATTAAGGAATGAAATGAAATAATCATTAGAAATAACACTTTTACTAAACTGCCCTTGTATTATATGAAAAAGACAAACTTAAAGTTGCATTGAAAATTGTGTGAGAAAAAAGTTGGAGTATTTATTGAGGGTAAAGTTGGAAGAAAAAAATTAAAGTTGTATTGGAAATGTAAAGTGACATTCATTTTGAAACAATTTTTTTTTGCTAAAGCGACACTCATTTTGAAACGGAGGGAGTAGTA

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