Plant MITE

SE2030733

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5935
Medicago truncatula
SE2030733
hAT
Hat29
AC235748:57305-57976
TAGAGCTG
TAGAGCTGTCAAAATG

Secondary structure and sequence

TSD TIR

5'

3'

             A        -  C ACC -  C     - TC --  -   --     TTTAGTGTGGGTCGGGCCGTAAAAAAAGTATGAAAAGAACGACCCTGCCTTTTTGGGCCAACCCATCGAGCCTGTGTTTTACAAGGTCGGCCTGGGCGGGGCCACTGGGCTTGCGGGCCAGCTCTTTAAGAACAATAAATACTATATAAAATAGTTTTATTAAGTAACACTGAATTATTTTATTATGTAATATTGGATTTTGTTGTCTTCGAGGTTCACTTTGTGAACCGTGATAAATACTTTACTTTTGCATTGATTCTTTTGTGTTATTTATCTTTATAGAT
TAGAGCTGTCAAA TGGCACAG GC C   G GG TGGCC C  T  GG CCC  TCTAT                                                                                                                                                                                                                                                                                            
||||||||||||| |||||||| || |   | || ||||| |  |  || |||  |||||                                                                                                                                                                                                                                                                                             
ATCTCGACAGTTT ACCCAGTC GG C   C GT TTTGG G  A  CC AGC  CCCGG                                                                                                                                                                                                                                                                                            
             -        A  - --- G  -     C -- AG  A   CA     TCGAGTATATTTACCCAGTCTCACCCAGCCGGGTGAACTATTTACCTGAAAGTTTTAACTCGGGTCAGATTAATCACCACCCGATGTGCCGGGCACTCGGTTGGGTCAGGTATAAAGTTTTACATAATAAAATAAAAAAAGTTTTTTTTTAGCTGCGTTACTTGTTGTTTCGATGTATACTGTAAAAAAAATTATCTTTATAATGTATTTAATAATATGTAGTTTATTTAGTGTACAGTAGCATTTGAAACAATTTATTATATTTTTTCTAGATAATTTAGTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030733

TAGAGCTGTCAAAATGGCACAGGCCCACCGGGCTGGCCCTCTGGCCCTCTATTTTAGTGTGGGTCGGGCCGTAAAAAAAGTATGAAAAGAACGACCCTGCCTTTTTGGGCCAACCCATCGAGCCTGTGTTTTACAAGGTCGGCCTGGGCGGGGCCACTGGGCTTGCGGGCCAGCTCTTTAAGAACAATAAATACTATATAAAATAGTTTTATTAAGTAACACTGAATTATTTTATTATGTAATATTGGATTTTGTTGTCTTCGAGGTTCACTTTGTGAACCGTGATAAATACTTTACTTTTGCATTGATTCTTTTGTGTTATTTATCTTTATAGATCTTGATTTAATAGATCTTTTTTATATTATTTAACAAAGTTTACGATGACATGTGATTTATTTGATGTATAATAATTTATGTAATATTTCTATTAAAAAAAATGTCATATGTAGCTTTGTTGTTCATTGCGTCGATTTTTTTTTGAAAAAAATAAAATAATACATTTTGAAATATGGACTGGGTTGGCTCACGGGCCGTGTAGCCCACCACTAATTAGACTGGGCTCAATTTTGAAAGTCCATTTATCAAGTGGGCCGACCCACTCTGACCCATTTATATGAGCTGGCCCACCGAACCGAAGCGGTTTTGGCCGGACTGACCCATTTGACAGCTCTA

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