SE2020736

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5938
  • Medicago truncatula
  • SE2020736
  • Mutator
  • M8
  • MtChr3:11679859-11680161
  • TTTTTTAAA
  • AAAGGGTTAATTAAGTTTTTAGTCCCTATAAATATTCAGAATTTTGCTTTTAGTCCCTACAAAATAAAATCACACTTTTTAGTCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTT                                      G A     C                                        ATAAA       ATCAACAT     GTCCTTATAAAATTTTTCATAAGCATTTTTAGTCCCT
      AAAGGGTTAATTAAGTTTTTAGTCCCTATAAATATTCA A TTTTG TTTTAGTCCCTACAAAATAAAATCACACTTTTTAGTCCTT     ATTTTCC        TTTTA                                     
      |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||     |||||||        |||||                                      
      TTTCCCAATTAATTCAAAAATCAGGGATATTTATAAGT T AAAAC AAAATCAGGGATGTTTTATTTTAGTGTGAAAAATCAGGGA     TAAAAGG        ATTCG                                     
AAATTT                                      G C     A                                        CACTG       -------A     TAAAATCCCTGATTTTTACGACTACCTTTTTAAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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