Plant MITE

SE2050737

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5939
Medicago truncatula
SE2050737
PIF/harbinger
To2
MtChr1:4364461-4364843
TAA
AGGCTTTGTTTGGGAGTTTGGAGGGGAATAGAATGGAAGGCTTTGAGAGGTGGAAATTACGAGGGAAAATGGAGA

Secondary structure and sequence

TSD TIR

5'

3'

TA            G               TA AA   -----    CTT    -        ATT              A  AATC     AAAAAATGAAAATAGTAGTTTTTTTAGAGAATGATAAATTAATACATATGATTACTATATTTTTAATTTTAAAATATTATATCAACATTGATAAAATTTGAAGCA
  AGGCTTTGTTTG GAGTTTGGAGGGGAA  G  TGG     AAGG   TGAG AGGTGGAA   ACGAGGGAAAATGG GA    TTTCA                                                                                                         
  |||||||||||| |||||||||||||||  |  |||     ||||   |||| ||||||||   |||||||||||||| ||    |||||                                                                                                          
  TCCGAAACAAAC CTCAAACCTCCCCTT  C  ACC     TTCC   ACTC TCCACCTT   TGTTTCCTTTTACC CT    CTCCC                                                                                                         
AA            A               -C GA   CTTTT    -TT    A        CTT              -  --AC     AGAACCCCTAATTGAAAAGAAGTATTATGTTTTGGATGAGTAAACCCCCTTGATTTTTTAACGTAACTTCGTCTCAAAAACCCCCAAAACCTCCCAAATATACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050737

TAAGGCTTTGTTTGGGAGTTTGGAGGGGAATAGAATGGAAGGCTTTGAGAGGTGGAAATTACGAGGGAAAATGGAGAAATCTTTCAAAAAAATGAAAATAGTAGTTTTTTTAGAGAATGATAAATTAATACATATGATTACTATATTTTTAATTTTAAAATATTATATCAACATTGATAAAATTTGAAGCATTCATATAAACCCTCCAAAACCCCCAAAAACTCTGCTTCAATGCAATTTTTTAGTTCCCCCAAATGAGTAGGTTTTGTATTATGAAGAAAAGTTAATCCCCAAGACCCTCCATCCCATTTTCCTTTGTTTCTTCCACCTACTCATTCCTTTTTTCCCAAGCCTTCCCCTCCAAACTCACAAACAAAGCCTAA

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