Plant MITE

SE2020741

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5943
Medicago truncatula
SE2020741
Mutator
M12
MtChr6:4826381-4826578
TCTTTTAAC
GGGAGTGGTTATGGTGCATAAG

Secondary structure and sequence

TSD TIR

5'

3'

TCTTTTAAC  G  T                -GAAA                      CC  A       GCT  -CTACACCCCCAAAG     C    CC
         GG AG GGTTATGGTGCATAAG     TCCTTATGTACCGTGCATAAAT  CA CATAATT   TC               TGAGC AAAA  
         || || ||||||||||||||||     ||||||||||||||||||||||  || |||||||   ||               ||||| ||||   
         CC TT TCAATACCACGTATTC     AGGAATACGTGGCACGTATTTG  GT GTGTTAG   AG               ACTTG TTTT  
CAATTTTCT  G  T                AATAA                      -T  A       --T  TCTAAAGAAAATAAA     -    TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020741

TCTTTTAACGGGAGTGGTTATGGTGCATAAGGAAATCCTTATGTACCGTGCATAAATCCCAACATAATTGCTTCCTACACCCCCAAAGTGAGCCAAAACCATTTTTGTTCAAAATAAAAGAAATCTGATGATTGTGATGTGTTTATGCACGGTGCATAAGGAAATAACTTATGCACCATAACTTTTGCCTCTTTTAAC

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