SE2030753

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5955
  • Medicago truncatula
  • SE2030753
  • hAT
  • Hat3
  • MtChr4:28897151-28897340
  • CTATGAAG
  • CTATGAAGCACGGACACTCTTCGGATTAGGCGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                  ------C      --TCT      TA   G  TCCC    --  T  --    TGTCGTGTCTGACACTCACACGAACACATATAATTA
        CTATGAAGCA       GGACAC     TCGGAT  GGC TG    GGTG  TC GA  CGCG                                    
        ||||||||||       ||||||     ||||||  ||| ||    ||||  || ||  ||||                                     
        GATACTTCGT       CCTGTG     GGCCTG  CTG GC    TGTG  TG TG  GTTG                                    
TAGTTTTA          ACCTATT      TCTGT      TG   A  ---C    AC  -  CG    TGGTGATTATTAAACTCTTTTAGTGTATTAAGTCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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