Plant MITE

SE2020766

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5968
Medicago truncatula
SE2020766
Mutator
M147
MtChr3:6613475-6613677
TACCTCCTT
GAAAATTGTTGTTTACAC

Secondary structure and sequence

TSD TIR

5'

3'

TACCTCCTT             TA   TTTGCACCAAG   A       C        G  A   T    TCCAATTTC               ACC      TAAA
         GAAAATTGTTGTT  CAC           CTA GGAAACA CATGAAAT AC AAT TAAC         CATCGATAGTTAACT   GCCGGT    
         |||||||||||||  |||           ||| ||||||| |||||||| || ||| ||||         |||||||||||||||   ||||||     
         CTTTTAACAACAA  GTG           GAT CCTTTGT GTGCTTTA TG TTA ATTG         GTAGCTGTCAATTGA   CGGCTA    
TTACTCCAT             GG   TAGTTTCCCCA   -       A        A  G   T    -------TA               ---      CCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020766

TACCTCCTTGAAAATTGTTGTTTACACTTTGCACCAAGCTAAGGAAACACCATGAAATGACAAATTTAACTCCAATTTCCATCGATAGTTAACTACCGCCGGTTAAAATCCATCGGCAGTTAACTGTCGATGATGTTATATTGGTAATTTCGTGATGTTTCCTAGACCCCTTTGATGTGGGAACAACAATTTTCTACCTCATT

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