SE2010768

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5970
  • Medicago truncatula
  • SE2010768
  • Tc1/Mariner
  • St6
  • MtChr3:24879623-24879919
  • TA
  • TACTCCCTCCGTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
               ATAATAAA     ------CAT   C -   -  A  -    CC  A      --------------T  CTCATTTCACTTTTCAATACAACAATAATTACTTTTTTCCAATTATAATTCTAATTAATACTACTTTCATCACTCTC
TACTCCCTCCGTCCC        TGAGT         TTG A AAA AA TA TTGT  TA AAAAGT               GA                                                                             
|||||||||||||||        |||||         ||| | ||| || || ||||  || ||||||               ||                                                                             A
ATGAGGGAGGCAGGG        ACTCG         GAA A GTG GT AT ATTC  TT TTTTAC               TT                                                                             
               CAAAATAG     AAAAAAAAA   - A   T  -  A    --  -      ATATTCACTTTCTCT  CTATTTATCAAAACTTACAGAACAATTCATAACCACGTAAGAAAGAATAGTATTTACGTTTCATCTTATATAACTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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