SE2020770

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5972
  • Medicago truncatula
  • SE2020770
  • Mutator
  • M39
  • MtChr3:22387806-22388192
  • TTAAAAAAG
  • AAGGCTTAAATATTGCACTCGTCCTTGCAAATATGGCCCGTTTAAGTTTTTGTCCCGGTAAATTAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAA                        T                         T    CG     T      --AATTGT                -----------------------T      -     -------    --       TGGAGGGACTATTTTCAAAAACAAAATTTTGTAGGACCTTTTTAAAAAACAAAATA
      AAGGCTTAAATATTGCACTCGTCC TGCAAATATGGCCCGTTTAAGTTTT GTCC  GTAAA TAAAAA        TTAGTCCCTGCAAAAA                        TTTTGT TTTTG       AAAA  TAGTCCC                                                        
      |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| ||||||        ||||||||||||||||                        |||||| |||||       ||||  |||||||                                                         
      TTCCGAATTTATAACGTGAGCAGG ACGTTTATACCGGGCAAATTTAAAA CAGG  CATTT ATTTTT        AGTCAGGGGCGTTTTT                        CCTGGG AAATT       GTTC  TGGTTTT                                                        
AAAAAA                        T                         C    AA     T      AAGTCTTT                TTAAACAGAAAATTTTTATGGGAA      T     CAGTACT    AG       ACGGATGCACCGCGTGCGACTAACTTGGGTGAAACATCAAAAACCAGGGACGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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