Plant MITE

SE2030773

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5975
Medicago truncatula
SE2030773
hAT
Hat42
MtChr8:13665535-13665878
ACTACCAT
TCAGGGCCG

Secondary structure and sequence

TSD TIR

5'

3'

ACTACCA         -    --- TA   CGTCGAGGCTGGGCGACAACACCGGGCCTCCAATTTTTTGGGGCCCAAAATATTTTTTTTTATATGTAAGACATGAAAATAATGGTTATATATCTATTAAAAGCAAATTTTTTCAATTTGTACAGCTTGCTTTAGTGGCATGGCC
       TCAGGGCCG GCCC   A  GCC                                                                                                                                                 
       ||||||||| ||||   |  |||                                                                                                                                                  
       AGTCCCGGC GAAT   T  TAA                                                                                                                                                 
TACCATC         A    TGT --   GTATCCGGGCCAAAATTAAAATATTCCCTACGTTTTTTTTATTTAAGTCTCGGGGTTTTTTAATTTATTCAATAAAATTTTTTTCTTATAATCTTTAGTGTGAAACCACCCAGAACTTGTGTACTGGAGTGTGAATTGTTTTTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030773

ACTACCATCAGGGCCGGCCCATAGCCCGTCGAGGCTGGGCGACAACACCGGGCCTCCAATTTTTTGGGGCCCAAAATATTTTTTTTTATATGTAAGACATGAAAATAATGGTTATATATCTATTAAAAGCAAATTTTTTCAATTTGTACAGCTTGCTTTAGTGGCATGGCCACTTTTTGTTAAGTGTGAGGTCATGTGTTCAAGACCCACCAAAGTGTGATTTCTAATATTCTTTTTTTAAAATAACTTATTTAATTTTTTGGGGCTCTGAATTTATTTTTTTTGCATCCCTTATAAAATTAAAACCGGGCCTATGAATTTGTTAAGACGGCCCTGACTACCAT

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