Plant MITE

SE2020784

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5986
Medicago truncatula
SE2020784
Mutator
M94
MtChr5:5256156-5256346
TAATATAAT
GGGAAATGTTAACGAGTGCTTCTGAGACACTCTTTAAGCAT

Secondary structure and sequence

TSD TIR

5'

3'

TAATATAAT   AAA            C    G       C         CTAAG     -    TT    --GAAAGT       TTTCTTGTATAGG
         GGG   TGTTAACGAGTG TTCT AGACACT TTTAAGCAT     GTAGT AAGA  TTAT        TTGTGCA             
         |||   |||||||||||| |||| ||||||| |||||||||     ||||| ||||  ||||        |||||||              
         CCC   ACAATTGTTCAC AGGG TTTGTGA AAATTCGTA     CATTA TTTT  AATA        TTTTAAT             
AAATATAAT   AGA            -    G       A         ---AG     C    TT    AGAAATTT       TTTTAAAGTTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020784

TAATATAATGGGAAATGTTAACGAGTGCTTCTGAGACACTCTTTAAGCATCTAAGGTAGTAAGATTTTATGAAAGTTTGTGCATTTCTTGTATAGGAAATTGAAATTTTTAATTTTTTTAAAGAATAATTTTTTCATTACGAATGCTTAAAAAGTGTTTGGGGACACTTGTTAACAAGACCCTAATATAAA

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