SE2020812

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6014
  • Medicago truncatula
  • SE2020812
  • Mutator
  • M67
  • MtChr7:13329225-13329693
  • TTATATTTT
  • GGCTAAATTACATTTTTGGTCATCTAACTATTTAATTGGTATCGGATTGGTCCTCTAACTAAAAATTAATTTATTTCGGTCCTCTAAGTTTCTCACTCTTACTACATTTAGTCCTTTCTGTTAGTTTTATTCAAATAAATGTTAGTGTTTGTGTTATGTGGATCATCTAACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATATTTT    A      A         A                                             A                             C               C                               T                 C    A     ATT       AT AT   GATCTTATGCCTTGTTAAGGTATTATGATTAAATAGT
         GGCT AATTAC TTTTTGGTC TCTAACTATTTAATTGGTATCGGATTGGTCCTCTAACTAAAAATT ATTTATTTCGGTCCTCTAAGTTTCTCACT TTACTACATTTAGTC TTTCTGTTAGTTTTATTCAAATAAATGTTAG GTTTGTGTTATGTGGAT ATCT ACTTT   TATTAGT  C  TTT                                     
         |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||   |||||||  |  |||                                     G
         CCGA TTAATG AAAAACCAG AGATTGATAAATTAACCATAGTCTAATCAGGAGATTGATTTTTAA TAAATAAAGCCAGGAGATTCAAAGAGTGG GATGATGTAAATCAG AAAGACAATTAAAATAAGTTTATTTGCAATC CAAACACAATACACCTA TGGA TGGAG   GACAAAG  T  GTG                                     
TTTTATATT    A      G         G                                             C                             C               A                               T                 -    C     ---       -- --   TATATATACTTGGTATTGTCAATGGTTATTATAGTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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