Plant MITE

SE2020818

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6020
Medicago truncatula
SE2020818
Mutator
M2
MtChr6:53693-53894
AATGTTTTA
GAGAAATGATATTTGAACAAACAT

Secondary structure and sequence

TSD TIR

5'

3'

AATGTTTTA   AAA  A          AA   --TTTTT       A          TTGTCTCTCATATTCACATTATCT      TTTCTCTCTCTAT  CTT    TTT
         GAG   TG TATTTGAACA  CAT       ACAACTT TGTGACAACT                        TTTTAC             TG   TGGT   
         |||   || ||||||||||  |||       ||||||| ||||||||||                        ||||||             ||   ||||    
         CTC   AC ATAAACTTGT  GTA       TGTTGAA ACACTGTTGG                        AAAATG             AT   ACCG   
ATTTTGTAA   AAC  A          AG   TATACAC       A          --------------------TTTT      TTTCCTTTACTCC  --C    TGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020818

AATGTTTTAGAGAAATGATATTTGAACAAACATTTTTTACAACTTATGTGACAACTTTGTCTCTCATATTCACATTATCTTTTTACTTTCTCTCTCTATTGCTTTGGTTTTTGTGCCACTACCTCATTTCCTTTGTAAAATTTTGGTTGTCACAAAAGTTGTCACATATATGGATGTTCAAATAACACAACTCAATGTTTTA

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