SE2020825

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6027
  • Medicago truncatula
  • SE2020825
  • Mutator
  • M1
  • MtChr5:6601807-6602232
  • TGATATAAA
  • ATATAAAGGTCAAATGCATCTAAAAGTTTTTCGTTTTTCCCAAAGTGGTCCTTTAAGTTTCAAAAGTCTCAAACAAGTTCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TG    AA            --------   AA        -                                                    -------     -   GAATCGTTTCAAACAAGTCCTATTGTAGATAACATAGTTGGTAATTGCTTCCTTGAACTCATCTTTGGTACCAAATCTGCCTCCTAACACCCACTTAAAATTAGTCATCTT
   ATAT  AGGTCAAATGCA        TCT  AAGTTTTT CGTTTTTCCCAAAGTGGTCCTTTAAGTTTCAAAAGTCTCAAACAAGTTCTTT       TAGTT TTT                                                                                                               
   ||||  ||||||||||||        |||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| |||                                                                                                               T
   TATA  TCCAGTTTACGT        AGA  TTCAAAAA GCAAAAAGGGTTTCACCAGGAAATTCAAAGTTTTCAGGGTTTGTTTAGGAAA       TTTTC GAG                                                                                                               
AAA    -G            AAATTTCC   AA        A                                                    TTCAAAG     A   TTTGTTCAGAAAAATCAAAAATTTAGCAAAGTTTGTTCAGGAAAATCTCCTACTACCACTACTAAGTCTACTATCGTTGTTTCTCGTAATAGGTGGTAAACAGTACGGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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