SE2030830

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6032
  • Medicago truncatula
  • SE2030830
  • hAT
  • Hat36
  • MtChr5:6817404-6817874
  • GTGATTTG
  • GATTTGTAGAGCTGTCAAAATGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GT    TG                   C    CG AAGGGCCGGCCCGAAAGCCCGAATAAAATGTAGGGCTTGGGCCGAATAATTGGAGCCCGAAATTGAAGAGGGCTTTTTAGCCCGGCCCGTAAAAGCCCTTGGCCCGTTAGGGCTAGCCCGTCCGGGCTCCGGGCTGCCCGGAAGCCCGCAAAAAATACAACTGTTTTTTTTTTTTTTTGTGGTCTGTGTGTGTGAGAGACTG
  GATT  TAGAGCTGTCAAAATGGGC GGGC  T                                                                                                                                                                                                          
  ||||  ||||||||||||||||||| ||||  |                                                                                                                                                                                                           
  TTAG  ATCTCGACAGTTTTGCCCG CCGG  G                                                                                                                                                                                                          
GT    TG                   -    -- CCGGCCCGGTTCCCGAAAATTCCCGGCCCGATTTTTCGGGCCAAACTTATACCCGACGTTTTTTACTCGGGCTCGGGCCGGGATATCCCGAGGGCCCGATTGCCCGGCCGGGACTGGGCATAAAAAAAGAAGGGAAAAGGTAAGAAAATTCATGCCTTGTATGTATTTATACGGCCCGATTGCCCAGTCGGGCCCGGGCATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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