SE2030832

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6034
  • Medicago truncatula
  • SE2030832
  • hAT
  • Hat43
  • MtChr2:17416798-17417159
  • GGAGTGAG
  • CAGGGCCGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GGAGTGAG            AATCAAATC   ---- GTTCGGCTCTAATATTAAAAATGGCTTCTAATAAAAATAATTAATGATAATTTAAACAATTGCAAATTAACAATAAGCATTATTTTGATTTTAATTTGTTTTGTTGAATTTTTGTTGTTGATAGATGTGTGTGTTTGACCTAACTTGTC
        CAGGGCCGTTCC         GGA    G                                                                                                                                                     
        ||||||||||||         |||    |                                                                                                                                                     C
        GTCTCGGCAAGG         CCG    C                                                                                                                                                     
GAGTGAGG            -------AA   TACA GTTCCTCGAAATGCCTCGGCTCGGAGGTTAAATACTCTCAGAGTTAATAAACATCCCCATACTCATATTAACAACCCTATATCCTATTATAGAAAACAATACATTCAGATTTAGTTTGTGAATAATAAATTGTTTTTATTTCTTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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