SE2020838

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6040
  • Medicago truncatula
  • SE2020838
  • Mutator
  • M112
  • MtChr3:24868546-24868828
  • TAAAATAAA
  • AGGGTTAAATATGTTTTGAGTCCCTACAAAATCACTAGTTTTTAAGTTTAGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATAA                 G        C     C  T                 C      A    TAA ---  TAATTTTAGTCATCCAAAATATTGTAGTTTGTAAAAATAGTCCCTATTTTAATTTTTTTACAA
        AGGGTTAAATATGTTTT AGTCCCTA AAAAT AC AGTTTTTAAGTTTAGTC CTATAA GTTT   T   GG                                                               
        ||||||||||||||||| |||||||| ||||| || ||||||||||||||||| |||||| ||||   |   ||                                                               A
        TCCCAATTTATACAAAA TTAGGGAT TTTTA TG TCGAAAGTTCAAATCAG AGATGT TTTT   T   AT                                                               
AAATAAAA                 A        A     A  T                 -      -    --- TTA  AAGTGAAAATGAAAGATAAAAGTAAAATATTACTGATAAAACCTCCTGATTTTCATGTGTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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