SE2020844

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6046
  • Medicago truncatula
  • SE2020844
  • Mutator
  • M15
  • MtChr7:17010708-17011120
  • TAAAATAAA
  • AGGCTTAAATATGTATTTCATCCTTGTAATTAGGGGCCGTTTAAAAATTGGTCCATGTATTCGCTAATCCTTGCAAACTAGTCTTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATAA                                    C                 A    T           T    ---    GTC     ATCA                  A  A   GA  A                    AAAATTCCAATTCTGCCCTTAAGAAGATGACAAAATATTGAAGAAAGAATTGGAAA
        AGGCTTAAATATGTATTTCATCCTTGTAATTAGGGG CGTTTAAAAATTGGTCC TGTA TCGCTAATCCT GCAA   ACTA   TTGCA    TTAATCATTTAAAATTTC TC TTT  CC ACTTAATCACTGCCACACAT                                                        
        |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||   ||||   |||||    |||||||||||||||||| || |||  || ||||||||||||||||||||                                                        C
        TCCGAATTTATACATAAAGTAGGAACGTTAATCCCC GCAAATTTTTAACCAGG ACAT AGCGATTAGGA TGTT   TGGT   GACGT    AATTAGTAAATTTTAAAG AG GAG  GG TGAATTAGTGACGGTGCAGT                                                        
AAATAAAA                                    A                 G    T           C    AAG    ---     AACA                  C  G   AG  G                    TCTTAAACTACTGCACAGTTAGTGACAATGTGTACTTTAAGGTTAAAATGGGGATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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