SE2010846

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6048
  • Medicago truncatula
  • SE2010846
  • Tc1/Mariner
  • St21
  • MtChr5:21017702-21018047
  • TA
  • TACTCCCTCCGTCCCATAATATAAGCAAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                TAA               CTCA        ATCCCAAAATATAAGCA     ----------  CAAACTTTTATCTTATTTAATCTTGTTTTTTTAAAAAATCTTTTTTCCAAGAAAAACTTTTGTTTATTCTCATGAAATTAAATGCAAATTACATTCAATTTTCCCTCT
TACTCCCTCCGTCCCA   TATAAGCAAAAAAAA    TTTTCTTT                 AAAAA          GA                                                                                                            
||||||||||||||||   |||||||||||||||    ||||||||                 |||||          ||                                                                                                            C
ATGAGGGAGGCAGGGT   ATATTCGTTTTTTTT    TTTTTTAG                 TGTGA          TG                                                                                                            
                TTA               ----        -----------------     ATAATTCTTT  ATTTTGTATTCTTAAACCTCATATTAAAAAACACAAAAGAAACCTTTTTCAAAATATCCTTCTACATTTTTGTTAAAAGTAACCGATAACCAATACCTTTTTTACTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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