SE2020852

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6054
  • Medicago truncatula
  • SE2020852
  • Mutator
  • M12
  • MtChr1:10943049-10943321
  • GGAAAGAGC
  • CGGGTGCGGTTGTAGTGCATAAGGAAATCCTTATGCACCCTGCATAAATCCAGAAATGGTTTTGGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GGAAAGAG   G         A           AA                      CC          -   -    ATAACTCACA     --     CCAAGGCAAAATGGTTTTGGCATAATTTTATACAAATCATACT
        CGG TGCGGTTGT GTGCATAAGGA  TCCTTATGCACCCTGCATAAAT  AGAAATGGTT TTG GAGT          GAAAC  CATTT                                           
        ||| ||||||||| |||||||||||  ||||||||||||||||||||||  |||||||||| ||| ||||          |||||  |||||                                            
        GCC ACGCCAATA CACGTATTCCT  AGGAATACGTGGGACGTATTTA  TCTTTACCAA GAC CTCA          CATGA  TTTTG                                           
CGAGAAAG   A         C           AA                      AA          A   A    ---------A     GG     GTAATCTACATGAATTACCAAAGGTCGTGGGACGTATTTAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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