SE2030868

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6070
  • Medicago truncatula
  • SE2030868
  • hAT
  • Hat1
  • AC235665:13356-13937
  • CTTTGAAG
  • CTTTGAAGTAGGCATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
                   --    -  CA   T   ----- ACGAGTTTTACCTTTCCCGTCCCCATACCCGATTCTCATATACTTACCCGTTACCCTACCCATACCCAACGGGGATGAGAAATTGAATCCCATCCCCGTCCCCGACGGGTTCGGGTATCCCCGCCCCATCCCCGTCCCCGTCCCCGCATTGAATAATTTTTTTAATAAAAAATATAAGTTTTTTTGCATCCCCAAGAGCAATGTTGTAATACATTATCCAACAATAAGCTCACTTTCACATTTGTTAGACAAA
CTTTGAAGTAGGCATGGCA  ATGG GG  GGG GGG     G                                                                                                                                                                                                                                                             
|||||||||||||||||||  |||| ||  ||| |||     |                                                                                                                                                                                                                                                             A
GAAGTTTCATCCGTACCGT  TTTT GG  TAT GGG     A                                                                                                                                                                                                                                                             
                   TG    A  --   -   CACCA TGGGCAGGCTTAGTTTGGTTTAAACTGCCCAAAAGGGGCAAAACTGACCCAAACCCATACCCATACCCAAAAGGGGCTAGAGCTTTGTGCCCATACCCTGCACATTGTCCATATATCCATGGGTGGGGCTTGGGTATGGGTTTGGGCAGGGTTTATATTTTTTGATGAAATACAACTATACAATACAATAAAACAAACTATTAACAGTACAATTATTTTTGATAGTAACTATAAATTTCCTAGTTGATTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3