Plant MITE

SE2020876

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6078
Medicago truncatula
SE2020876
Mutator
M11
MtChr8:15760381-15760573
AATAAATAA
GGGAAATGTTAACGAGTGCTCTTGGGGTACTCTTTAAGCACTTTAAATAGTAAGTTTTTAATAAAAAGTT

Secondary structure and sequence

TSD TIR

5'

3'

AATAAATAA   AAA                 GG            G  C      --      --      AA         GTGT   GAA    TTGA
         GGG   TGTTAACGAGTGCTCTT  GGTACTCTTTAA CA TTTAAA  TAGTAA  GTTTTT  TAAAAAGTT    AAT   TGCA    
         |||   |||||||||||||||||  |||||||||||| || ||||||  ||||||  ||||||  |||||||||    |||   ||||     
         CCC   ACAATTGCTCACGGGGG  CTGTGAGAAATT GT AGATTT  ATCATT  TAAGAA  ATTTTTCAG    TTG   ATGT    
AATAAATAA   AGA                 TA            A  A      AA      AA      -A         ----   ATA    TAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020876

AATAAATAAGGGAAATGTTAACGAGTGCTCTTGGGGTACTCTTTAAGCACTTTAAATAGTAAGTTTTTAATAAAAAGTTGTGTAATGAATGCATTGAAAATTGTAATAGTTGACTTTTTAAAAGAATAATTACTAAATTTAGAATGATTAAAGAGTGTCATGGGGGCACTCGTTAACAAGACCCAATAAATAA

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