Plant MITE

SE2020880

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6082
Medicago truncatula
SE2020880
Mutator
M146
MtChr7:11634987-11635179
TTTTTAATT
GTTAAGAAGTGTCCTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTAATTGAGAAAT     GA        T   ACAAT       TAACTTTAAATAGTAAGTTTTTGTCAAAATTTATGAAATCAATGCGTTGG
                GTTAA  AGTGTCCT AAG     TGTTTAG                                                  
                |||||  |||||||| |||     |||||||                                                  A
                CAATT  TCACAGGA TTC     GAGAAAT                                                  
TTTATTTTTCCCAGAT     GC        -   -CCGT       TCCTAAAAATTATTTCTTTAATAAAAAATTTTTTCAGTTTTTGAAATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020880

TTTTTAATTGAGAAATGTTAAGAAGTGTCCTTAAGACAATTGTTTAGTAACTTTAAATAGTAAGTTTTTGTCAAAATTTATGAAATCAATGCGTTGGAAATTAAAGTTTTTGACTTTTTTAAAAAATAATTTCTTTATTAAAAATCCTTAAAGAGTGCCCTTAGGACACTCGTTAACTAGACCCTTTTTATTT

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