Plant MITE

SE2050888

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6090
Medicago truncatula
SE2050888
PIF/harbinger
To11
MtChr4:5725937-5726177
TAA
AGGGTGTGTTTGGAT

Secondary structure and sequence

TSD TIR

5'

3'

TA               TGAGGGTTTAT        A             CAA    -A                G A         TTT    T     AAATTAATTGTTTT    -GTATT       CA
  AGGGTGTGTTTGGAT           GAGGGGAA GGAGGGGAGGGTT   TTTT  TTTTTTAAATTACGAA A TGTAAAATG   TTTT AAAGT              TGAA      ATATGAT  
  |||||||||||||||           |||||||| |||||||||||||   ||||  |||||||||||||||| | |||||||||   |||| |||||              ||||      |||||||  T
  TCCCACACAAACCTA           CTCCCTTT CCTCCCCTCCCGA   AAAA  AAAAAATTTAATGCTT T ATATTTTAT   AAAA TTTTA              ACTT      TGTACTA  
AA               ----------C        C             ATG    GA                G A         TAT    C     --------------    AATTGT       TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050888

TAAGGGTGTGTTTGGATTGAGGGTTTATGAGGGGAAAGGAGGGGAGGGTTCAATTTTATTTTTTAAATTACGAAGAATGTAAAATGTTTTTTTTAAAGTAAATTAATTGTTTTTGAAGTATTATATGATCATTTATCATGTTGTTAATTCAATTTTCAAAATATTATTTTATAATGTTCGTAATTTAAAAAAAGAAAAGTAAGCCCTCCCCTCCCTTTCCCTCCATCCAAACACACCCTAA

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