Plant MITE

SE2030890

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6092
Medicago truncatula
SE2030890
hAT
Hat33
MtChr1:25904426-25904673
ATCGTGTC
CGTGTCCAGGGGCGGTTCTA

Secondary structure and sequence

TSD TIR

5'

3'

AT    TC   G     TT   -------A     -  C AC      CACTCGCCCGGGCTCCGGGCCAAATTTTTTGCAATTTCTTGTGTAAATCCCTATGAATTTCTTATATAAACAAACCCCTAT
  CGTG  CAG GGCGG  CTA        GGCCC GG G  CCCGGG                                                                                 
  ||||  ||| |||||  |||        ||||| || |  ||||||                                                                                  
  GTGC  GTC CCGCC  GGT        CATTT GG G  ACGTTT                                                                                 
CT    TA   A     TC   CCTTATAA     C  - -C      TTTTTTAAACGTTGTGTAAATATCCCGCATGTATTCTTTAACGTTCGTTTATTATTTTTTACATTTCTTTAACGGGTTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030890

ATCGTGTCCAGGGGCGGTTCTAAGGCCCGGCGACCCCGGGCACTCGCCCGGGCTCCGGGCCAAATTTTTTGCAATTTCTTGTGTAAATCCCTATGAATTTCTTATATAAACAAACCCCTATAAATTGGGCAATTTCTTTACATTTTTTATTATTTGCTTGCAATTTCTTATGTACGCCCTATAAATGTGTTGCAAATTTTTTTTTGCACGGGCTTTACAATATTCCTGGCTCCGCCACTGATCGTGTC

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