SE2050893

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6095
  • Medicago truncatula
  • SE2050893
  • PIF/harbinger
  • To29
  • MtChr5:33028255-33028602
  • TAA
  • AGAGCATCCACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G    C    ---     -   ACTTCACCTATTTAACATCGGAATTAATAAGCACCCTCATGTTAAGAAAATGTTTGGTGCTTATAGAGAAGGATGGCTATATAAGCACCCTCTCTCTCTCTTTAATTTTCGTGGGTCATATATGTAATAAATTGTACAAAAATCAATAA
  AGA CATC ACAA   AGGTG GGT                                                                                                                                                     
  ||| |||| ||||   ||||| |||                                                                                                                                                      
  TCT GTAG TGTT   TCGTG GGT                                                                                                                                                     
AA   A    A    GTA     A   AAAACCCACGAATTCACCCAGTAGGTACATGTGTAGTAGATAAAAAAATTAAAAGTTACTATAATGAATTATTCGTGGTTAGAGAGGTTGGGTTGTGGAGTATTTTACCTAGGATAATTATTGAGTAACAGTAACATAAAGTTGTTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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