Plant MITE

SE2020894

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6096
Medicago truncatula
SE2020894
Mutator
M104
MtChr7:22789182-22789954
CAGATGTAA
CAGATGTAAGAAGATTGCTTTTTAGGCCCCCCAATATCTCTTTAGGCCCCCTAAAAGTACAAAAATAACCTTTATAATACATCCGGTAGTTACATACCGGTAGTGCATTTTAAATTTTCACATTTTACACCTTCGGTATGTACATACCAGAGGCACATTTACAAATTTTCGCGTTTATCGCATT

Secondary structure and sequence

TSD TIR

5'

3'

     GA  TAA                       -                                                                                                                    A                                   ------AT      TAAATGTACATGTTCTGCTATGTTGGAAAATTCACAAACTTTTGGTAGGGTGCATAAAATTTACAGAAATAAAAGGATCAAACTTTTCATTGAATATGACAGAACTCTAAAAAAATTATGCAGAAACAATACGAGAGAGGAAGAAGCAAGGTTTACCTTCTAAATGATTGCAATTGAGTAAAGATTGACAC
   CA  TG   GAAGATTGCTTTTTAGGCCCCCC AATATCTCTTTAGGCCCCCTAAAAGTACAAAAATAACCTTTATAATACATCCGGTAGTTACATACCGGTAGTGCATTTTAAATTTTCACATTTTACACCTTCGGTATGTACATACC GAGGCACATTTACAAATTTTCGCGTTTATCGCATT        GTTATT                                                                                                                                                                                               
   ||  ||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||                                                                                                                                                                                                
   GT  AC   CTTCTAACGAAAAATCCGGGGGG TTATAGAGAAATCCGGGGGATTTTTATGTTTTTATTGGAAATATTATGTAGGCCATCAATGTATGGCCATCACGTAAAATTTAAAAGTGTAAAATGTGGAAGCCATACATGTATGG CTCCGTGTAAATGTTTAAAAGTGTAAATAGCGTAA        TACAAG                                                                                                                                                                                               
AAT  AG  ---                       G                                                                                                                    C                                   GCCATCAA      ACCTCCTTGTAAGTAAAACGCTAAAGAGTTAATGTGGAGGCCATATATATATGGCATGAGGTGGGTGCAACAATAGACTTATTTTACCACGTCAAAAAATTCTCAATAAAAGATTCGAAGTTATAACAAGGTATGGAACGCAAAAAACCGGTTAAAAACAACACAAAAGTAGTGTTAATTATCTTGTTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020894

CAGATGTAAGAAGATTGCTTTTTAGGCCCCCCAATATCTCTTTAGGCCCCCTAAAAGTACAAAAATAACCTTTATAATACATCCGGTAGTTACATACCGGTAGTGCATTTTAAATTTTCACATTTTACACCTTCGGTATGTACATACCAGAGGCACATTTACAAATTTTCGCGTTTATCGCATTATGTTATTTAAATGTACATGTTCTGCTATGTTGGAAAATTCACAAACTTTTGGTAGGGTGCATAAAATTTACAGAAATAAAAGGATCAAACTTTTCATTGAATATGACAGAACTCTAAAAAAATTATGCAGAAACAATACGAGAGAGGAAGAAGCAAGGTTTACCTTCTAAATGATTGCAATTGAGTAAAGATTGACACCATTTGTTCTATTAATTGTGATGAAAACACAACAAAAATTGGCCAAAAAACGCAAGGTATGGAACAATATTGAAGCTTAGAAAATAACTCTTAAAAAACTGCACCATTTTATTCAGATAACAACGTGGGTGGAGTACGGTATATATATACCGGAGGTGTAATTGAGAAATCGCAAAATGAATGTTCCTCCAGAACATAACTACCGAATGCGATAAATGTGAAAATTTGTAAATGTGCCTCCGGTATGTACATACCGAAGGTGTAAAATGTGAAAATTTAAAATGCACTACCGGTATGTAACTACCGGATGTATTATAAAGGTTATTTTTGTATTTTTAGGGGGCCTAAAGAGATATTGGGGGGGCCTAAAAAGCAATCTTCCAGATGTAA

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