Plant MITE

SE2020898

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6100
Medicago truncatula
SE2020898
Mutator
M136
MtChr5:3370270-3370469
TTTTTTTAA
AAGG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTT    AAAA           GCCT     A             T     A      TTAAAAAATAAATGTTGTA    -   GA AAATTTTTAAGTTTTTAA
       AAGG    TGTTAACTTGT    TAAGG CACAAGATAAGGA CTAAA ATGGAA                   TTAA AAA  T                  
       ||||    |||||||||||    ||||| ||||||||||||| ||||| ||||||                   |||| |||  |                   
       TTCC    ACGGTTGAACA    ATTCC GTGTTTTATTTTT GATTT TATTTT                   CTAG ACT  T                  
AACTTTT    CAGA           --GT     C             T     A      ---------------TAAA    A   -- TTAACACGTAAGTATTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020898

TTTTTTTAAGGAAAATGTTAACTTGTGCCTTAAGGACACAAGATAAGGATCTAAAAATGGAATTAAAAAATAAATGTTGTATTAAAAAGATAAATTTTTAAGTTTTTAAGATTATGAATGCACAATTTTCAAGATCAAATTTTTATATTTAGTTTTTTATTTTGTGCCCTTATGACAAGTTGGCAAGACCCTTTTTTCAA

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