SE2050905

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6107
  • Medicago truncatula
  • SE2050905
  • PIF/harbinger
  • To31
  • MtChr6:22779978-22780272
  • CAT
  • CTTGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
CATGTC        -----AATAAACAA    ATTT   - GA   AGCATAAGCGCTTATCATGATAAGCACTTATGTGTAAGCTATCTCTATGACAAAAGATGAAATAAAGTTAAATTATTTTAGTATAAGCTATAAGCTATAAGCTGATT
      CTTGTTTG              CATA    GTA G  TAT                                                                                                           
      ||||||||              ||||    ||| |  |||                                                                                                           C
      GGACAAAC              TGGA    ATA A  TGA                                                                                                           
TACTCC        CTAACTGAATAAAC    ----   G --   TCGTATTCATGAATATTCCGAAAAACTCTCTTGAATACTTTTATCGACTATTGTACAAGAATTCAACAAAAATAGAATAAAAGTGTTCGAGAGGCTCTATCGAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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