Plant MITE

SE2020915

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6117
Medicago truncatula
SE2020915
Mutator
M2
MtChr1:27156257-27156457
TTCTTTTAA
AAGAGAAATGATATTTGTACAACCACTTTATTACAATTTTTTGACAACTTT

Secondary structure and sequence

TSD TIR

5'

3'

TTCTTTT     AAA      -   T       C   ATT        -           CTCTCTCATACTCACATTATATTTT    C         CTTTT  -TCTC    TTG
       AAGAG   TGATAT TTG ACAACCA TTT   ACAATTTT TTGACAACTTT                         TATT TCTCTCTTC     TC     TCTA   
       |||||   |||||| ||| ||||||| |||   |||||||| |||||||||||                         |||| |||||||||     ||     ||||    
       TTCTC   ACTATA AAC TGTTGGT AAA   TGTTGAAA AACTGTTGAAA                         ATAA AGAGAGAAG     AG     AGGT   
AATTTTC     ATC      T   -       -   CAC        C           -------------------------    A         -----  TAACC    TTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020915

TTCTTTTAAGAGAAATGATATTTGTACAACCACTTTATTACAATTTTTTGACAACTTTCTCTCTCATACTCACATTATATTTTTATTCTCTCTCTTCCTTTTTCTCTCTCTATTGTTTTGGACCAATGAGAAGAGAGAAAATAAAAGTTGTCAACAAAGTTGTCACAAATGGTTGTCAATATATCACTACTCTTCTTTTAA

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