Plant MITE

SE2020916

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6118
Medicago truncatula
SE2020916
Mutator
M92
MtChr8:15412317-15412798
TATATAAAA
TATATAAAAGGCTTAAATGCATTTTTCACCCCCTATGTTTCAAAAAGTTGCGAATTTGGCCCCCTTATAAAAAAAAAGGATATTTTGACCC

Secondary structure and sequence

TSD TIR

5'

3'

        AAA                                          C  A                      A                TAACTTTTGGCCCTCTTTTGATTAGCTGATTTTGATAGAGACTATGCCAATTTTTCAGTCTCTGATGGTGTAAACTAGCATGGGGATAGAAGGATGCTGATAAGTGGAGTCCAAACTGGCATATGGTGTCCAAACTGGCATGATAAGT
   TATAT   AGGCTTAAATGCATTTTTCACCCCCTATGTTTCAAAAAGTTG GA TTTGGCCCCCTTATAAAAAAAA GGATATTTTGACCCCC                                                                                                                                                    
   |||||   |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||                                                                                                                                                     
   ATATA   TCCGAATTTACGTGAAAAGTGGGGGATACAAAGTTTTTCAAC CT AAACCGGGGGAATATTTTTTTT CCTATAAAACTGGGAG                                                                                                                                                    
AAA     ---                                          A  A                      A                AAAACTAATCGACTAAATACAGTTAAAGAGTCAGAGACTACCACATTTGACCGTACCCCTATCTTCCTACGAATATTCACCTCAGGTTTGACCGTACCACATTGAAAACCGGGGGGATTTTTTACTAGGTGAATAGTCAAACCTGAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020916

TATATAAAAGGCTTAAATGCATTTTTCACCCCCTATGTTTCAAAAAGTTGCGAATTTGGCCCCCTTATAAAAAAAAAGGATATTTTGACCCCCTAACTTTTGGCCCTCTTTTGATTAGCTGATTTTGATAGAGACTATGCCAATTTTTCAGTCTCTGATGGTGTAAACTAGCATGGGGATAGAAGGATGCTGATAAGTGGAGTCCAAACTGGCATATGGTGTCCAAACTGGCATGATAAGTGGAGTCCAAACTGATAAGTGGATCATTTTTTAGGGGGGCCAAAAGTTACACCATGCCAGTTTGGACTCCACTTATAAGCATCCTTCTATCCCCATGCCAGTTTACACCATCAGAGACTGAGAAATTGACATAAATCAGCTAATCAAAAGAGGGTCAAAATATCCATTTTTTTTATAAGGGGGCCAAAATCACAACTTTTTGAAACATAGGGGGTGAAAAGTGCATTTAAGCCTATATAAAA

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