SE2050917

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6119
  • Medicago truncatula
  • SE2050917
  • PIF/harbinger
  • To32
  • MtChr5:37627850-37628143
  • CAA
  • GGGCCTGTTTGGATTTGCTTATTTAAGCTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA     -         ---TT        --A       CAAC  ATATAGGCACTTGTGACACTGTTTGGGAGAACTTACAAAAACAGGCTATGACTTGCTTATAAGTTGTTTTCAGCTTATTTCCATAAGCTCTCTAAGATAGCTTAT
   GGGCC TGTTTGGAT     GCTTATTT   AGCTTAT    TG                                                                                                         
   ||||| |||||||||     ||||||||   |||||||    ||                                                                                                          
   CCCGG ACAAACCTA     TGAATAAA   TCGAATA    CG                                                                                                         
 AA     G         TTTGT        ACG       ---T  CATTCGCAAATACTATATTCGCCAATACTTATTCGATAAAAGCATTGTGTTCTATTTTATTTCAATTTGATAAAAAAAAAAAAAATTATTAGATATTCGACAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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