SE2050926

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6128
  • Medicago truncatula
  • SE2050926
  • PIF/harbinger
  • To33
  • MtChr2:25270725-25271455
  • TTA
  • AGACCATTTACAATGGCATGTTGAATTTGCC

Secondary structure and sequence

TSD    TIR
5'



3'
TT                  -----    G   TT           -         -- --  G  G    --   GTAGGTGGGGGGTGTTGAAATGGGAAAAAAGTGAGTTGGAGGAGGGAAGTGTTGAAACAATTCAACATGTTGAATGCCTGGCCCACGGAGACACTTGGCGCGCGCTGATTGGCTGCTCGGATTTTTATCTTCTTAATAATTTGGACCCAATTATTTCATTGCAAATAATTTTATTTTTTTTTACCAAAATTCGTATTTTTTTTTTCTCTATAAATAGAGACTTGGATCATTTGATTTGGACACAGAAAAAAAAAATCAAGTTTTTCACTCTCTTAATCTTATTATTAGCTTTGTAT
  AGACCATTTACAATGGCA     TGTT AAT  GCCATTCAACA TGTTGAACC  C  TT TT AACC  ATT                                                                                                                                                                                                                                                                                                        
  ||||||||||||||||||     |||| |||  ||||||||||| |||||||||  |  || || ||||  |||                                                                                                                                                                                                                                                                                                        T
  TCTGGTAAATGTTACCGT     ATAA TTG  TGGGAATTGTG GTGAAAAAG  A  GG TT TGAG  GTA                                                                                                                                                                                                                                                                                                        
AT                  TTTAT    G   -T           G         TT AG  -  G    GT   ATAAAAGAGAGAGAATTAAATTGTGGGTAAATTAAAAATGGAGAGGTTACTAAAAAAGTAAGTTGTGGAATAGGGTGGTATAAAATAAAAAATAAGAATAAATTAAAATATAAAAACAAAAATATTAATGTATTTTAATGTTAATAGCTAATATTAATTTAATTTTACTTCTTTGTGAATTGTTAAAAAAAAAACATTTTTGCTTTAAATAAATTTATTAAAAAAAAATAAAAGAATTGTATTTATTTTACGTTATGTTGTTTGATTTATTTGTGATTTTGAAGTTTTCTTTCCGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End