Plant MITE

SE2020931

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6133
Medicago truncatula
SE2020931
Mutator
M4
MtChr2:3788895-3789204
TTTAATCTA
AGGGTTAATAGGTCTTTATCCCCTGTAATATAAGTCATTTTCGGTTTTTTTCCCTATAAATTTTTTATTTTGATTCACCCCTGTAAAGTATTTTTGTTTTGATTTACCACCCTAATAGGCCAAACAAAAACCAATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TTTAATCT                                                  T    -A    T                C -                             A                      --C      ATTTTAT
        AGGGTTAATAGGTCTTTATCCCCTGTAATATAAGTCATTTTCGGTTTTTT CCCT  TAAA TTTTTATTTTGATTCA C CCTGTAAAGTATTTTTGTTTTGATTTACC CCCTAATAGGCCAAACAAAAAC   AATTTT       
        |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||       T
        TCCCAATTATCCAGAAATGGGGGACATTATATTCAGTAAAAGCCAAAAAG GGGA  ATTT AAAAATAAAACTAAGT G GGACATTTTATAAAAACAAAACTAAATGG GGGATTATCCGGTTTGTTTTTG   TTAAAG       
ATCTAATT                                                  -    AC    T                A A                             A                      CTT      AACTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020931

TTTAATCTAGGGTTAATAGGTCTTTATCCCCTGTAATATAAGTCATTTTCGGTTTTTTTCCCTATAAATTTTTTATTTTGATTCACCCCTGTAAAGTATTTTTGTTTTGATTTACCACCCTAATAGGCCAAACAAAAACCAATTTTATTTTATTTTTTCAAGAAATTTTCGTTTTTGTTTGGCCTATTAGGGAGGTAAATCAAAACAAAAATATTTTACAGGAGATGAATCAAAATAAAAATTTTACAAGGGGAAAAACCGAAAATGACTTATATTACAGGGGGTAAAGACCTATTAACCCTTTAATCTA

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