SE2030934

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6136
  • Medicago truncatula
  • SE2030934
  • hAT
  • Hat5
  • MtChr4:2274199-2274512
  • CATACCAG
  • GCAGTGGCGGAGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
CATACCA    T         AG       ATAGAGTCTGGGCAAAAAATTTATCGCAAAACGTTACTTCCTTCCTACAAATAATTTCACATTTCCTGCAGATAAATTCACATTTCCTACGGATATATCTTTCCTGCGGAACCTAAATCCTTGGCAAA
       GCAG GGCGGAGCC  GAATTTT                                                                                                                                
       |||| |||||||||  |||||||                                                                                                                                 
       CGTC CCGCCTCGG  GGGGGGG                                                                                                                                
GACCATA    C         --       TCGATCGGACCCGATCACGGGTCCGAGTCGAGGTTGAAAGAAACATCGTTCGGGATGGTAATGATCTTAAAAATCGAAAAGGACGCCTAAACACACATTTAAGGCGTCCTTTACATAAAGGACGTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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