SE2020936

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6138
  • Medicago truncatula
  • SE2020936
  • Mutator
  • M35
  • MtChr1:14691301-14691864
  • TATATTTTT
  • GGCTTAATTACACTTTTGGTCCTTGTGTTTTGGCCTACTAACGAAACTGGTCCTGCCATTTTAAAACAGAACAAAACGGTCCTTCAATTATCATTTTTGTTGCATTTTTCGTCCTACCTCATATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TATATTTTT                                 C     A                 A                A                                             A     TCAAA                                 GGTTTTAGACATA    A    C             C             A        C              C                      --  C       GAAACAT
         GGCTTAATTACACTTTTGGTCCTTGTGTTTTGG CTACT ACGAAACTGGTCCTGCC TTTTAAAACAGAACAA ACGGTCCTTCAATTATCATTTTTGTTGCATTTTTCGTCCTACCTC TATTT     CTCCAGAAACGCAGAGAAGTAATAGTTTTAGGC             CTCC TATG TTAACCATGAAAT AACAAGGAATAAA CATGTGGG ACAAGGAATCTATT TATTCAGCACACTAACAAAAAA  AC CTAATTT       
         ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||             |||| |||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||  || |||||||        
         CCGAATTAATGTGAAAACTAGGAGCACAAAACC GATGA TGCTTTGATTAGGACGG AAAATTTTGTCTTGTT TGCCAGGAAGTTAATAGTAAAAACAACGTAAAAAGCAGGATGGGG GTAAA     GAGGTTTTTGCGTCTCTTTATTATCAAAATCTG             GAGG ATAC AGTTGGTACTTTA TTGTTCCTTATTT GTACACCT TGTTTCTTAGGTGA ATAAGTTGTGTGATTGTTTTTT  TG GATTAAA       
TTTTTATAT                                 C     G                 G                A                                             G     --TAA                                 ---------GATG    -    A             T             C        A              A                      TT  A       GATTCTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End