SE2030938

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6140
  • Medicago truncatula
  • SE2030938
  • hAT
  • Hat18
  • MtChr8:36451399-36452164
  • ATGTGATT
  • TCTCTGTTGTCAATAGCGGCCGAACGTGGCGCGGACCGGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTGAT             T     CC   C         AC      AAAA   C  --A     ACACAGTG    ---     GGAGCGTTTGGAGAAAGCGGATGAAGCGGGTGCAATTGCGGACAAAAGCGGGCGCGATGCAGGTCAAAGCGGGCGCTTTTGACAACCCTGTGTAAAATACTAGATTTCCCTTCATTTAAAACCGTTTTAAGGGTCATTTTTGTAATTTTCAAAACCCTAACTATTACTCTTCTCCACCAGAACCAAATACACAGCCACAAACTCAACTTCTTCATCGTACCAACAAAACAAATCCATCTCCTTGTCTCATCATCTCAGAACCCATCTTTGTTCTCCTCTCTTCATCTCTTGATTTCAGAATTT
       TCTCTGTTGTCAA AGCGG  GAA GTGGCGCGG  CGGCCA    CAA AA   GCGCG        CTCC   AACGC                                                                                                                                                                                                                                                                                                               
       ||||||||||||| |||||  ||| |||||||||  ||||||    ||| ||   |||||        ||||   |||||                                                                                                                                                                                                                                                                                                               G
       AGAGACAACAGTT TCGCC  TTT CGCCGCGCC  GCCGGT    GTT TT   TGCGC        CGCC   CGCCC                                                                                                                                                                                                                                                                                                               
TTAGTGT             -     --   A         GC      -GGG   T  AAC     ------CG    CCA     GCGATAAAGCCACTGCGCCTGTGATTATATAAATTATAATTTTATGATATGACAATTTTTTTAATGATTTTATGGAATTTGTAATGAGTTTTAAGTACTTCATAAGGATTAAACTTTATTTTCAATGTTCAGAATTCGTTTTGTATTTTGTATAAACGTTTTTTATGATTATTTTAAGTTCCTTTGGCTGTGAAATTCGGAGATTTCGAATTTCATTGTTTTGACGTTTTGTAATTGTTAATTGTTCAAGTAGGAGGGTTAATTTGTTTAACTGTTTAATTGTTAATTGTTGATTGTTTAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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