Plant MITE

SE2020942

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6144
Medicago truncatula
SE2020942
Mutator
M123
MtChr3:23212387-23212588
AATAAAAAA
GG

Secondary structure and sequence

TSD TIR

5'

3'

AATAAAAAA  AGAA       C         G     T   ATA      TAA   T  A     ---A      AAAAA      AAAGTCATAAATTTAACT
         GG    TGTTAAT ATTGCCCTT AGGCA TGG   AAGGGA   AAA AG AATAT    GCATTG     TTGTGA                  
         ||    ||||||| ||||||||| ||||| |||   ||||||   ||| || |||||    ||||||     ||||||                  T
         CC    ACGATTG TAACGGGAG TCCGT ACC   TTCCTT   TTT TC TTGTA    CGTAAC     AAGTTG                  
AAAAAATAA  CAGA       A         -     T   -AA      TGG   -  A     CAAA      ---CA      TTGTAAAACTGAAAATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020942

AATAAAAAAGGAGAATGTTAATCATTGCCCTTGAGGCATTGGATAAAGGGATAAAAATAGAAATATAGCATTGAAAAATTGTGAAAAGTCATAAATTTAACTTTTTAAAAGTCAAAATGTTGTTGAAACCAATGCAAACATGTTACTTTTGGTTTCCTTAACCATTGCCTGAGGGCAATAGTTAGCAAGACCCAATAAAAAA

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