SE2050972

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6174
  • Medicago truncatula
  • SE2050972
  • PIF/harbinger
  • To1
  • MtChr8:9270612-9270951
  • TAA
  • AGAGCATCCACAATGGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C --     TTCATCATTTAAGATCTGGTATCTAATAGGTACCTCCATTGCGGAAATTTTTTTTTGGAGGTCTTAAAAGATCCAATGTCTAACTTAAGACCCCCATTCTTAAATGGGCCCACATCACTTTTTATTAAAATAATATTTTTCATG
  AGAGCATCCACAATGG G  AGGTC                                                                                                                                                
  |||||||||||||||| |  |||||                                                                                                                                                 
  TCTCGTAGGTGTTACC C  GGAGT                                                                                                                                                
AA                T TG     TGAAACTCCAGAATTTACCCAGAGTGTACCTGTGTAGTGAAAAATTATTAAAAAATTATTATTATGAATTATCCATGAGTTGGTGAGGTTATCTCTAGGAGATTGTTTTCCAGATTATCCCAGGGTGTTTATAATAAATTATCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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