Plant MITE

SE2010985

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6187
Medicago truncatula
SE2010985
Tc1/Mariner
St30
MtChr3:35200280-35200560
TA
TACTCCCTCCGCTTTTTATCTTTTGATGTTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

           C     --A                -----      -  ACAAGTCTTGAGGAGTAATTAAGTTATAGAAATATTTGTATGTTTTAGACTAAAATGTCCTTGTTTATGATTAAATTCACATTTGATAAACCAA
TACTCCCTCCG TTTTT   TCTTTTGATGTTTTAG     CTCCTG GC                                                                                              
||||||||||| |||||   ||||||||||||||||     |||||| ||                                                                                              A
ATGAGGGAGGT AAAAA   AGAAAACTACAAAATC     GTTGAT CA                                                                                              
           A     AAA                TTGAA      A  AGGTTTTATAAACTACAAAATCATATAAATTATAAAAAGGGTGCAAATGGGAACAACTTTTTGTTTGGTATTTTGATAATTTCCTCAACCCTGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010985

TACTCCCTCCGCTTTTTATCTTTTGATGTTTTAGCTCCTGGCACAAGTCTTGAGGAGTAATTAAGTTATAGAAATATTTGTATGTTTTAGACTAAAATGTCCTTGTTTATGATTAAATTCACATTTGATAAACCAAAGGTCCCAACTCCTTTAATAGTTTTATGGTTTGTTTTTCAACAAGGGTAAACGTGGGAAAAATATTAAATATACTAAAACATCAAATATTTTGGAACATAGTTGAAGTTCTAAAACATCAAAAGAAAAAAAAAATGGAGGGAGTA

Copy Cancel