Plant MITE

SE2020992

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6194
Medicago truncatula
SE2020992
Mutator
M18
MtChr8:1054828-1055034
TTCTAATTA
AGAGTAATGCTAGTAACACACTCTTTTGAACACACTCTCTAATACTCACTCTTTTATTGGTTTAAATCATTGTGGATCTACACTTTG

Secondary structure and sequence

TSD TIR

5'

3'

TTCTAATT    T           C  A T     G     A       A             A    TTT      T    GA    --       AAAATTG
        AGAG AATGCTAGTAA AC C CTTTT AACAC CTCTCTA TACTCACTCTTTT TTGG   AAATCA TGTG  TCTA  CACTTTG       
        |||| ||||||||||| || | ||||| ||||| ||||||| ||||||||||||| ||||   |||||| ||||  ||||  |||||||       A
        TCTC TTACGATCGTT TG G GAAAA TTGTG GAGAGAT GTGAGTGAGAAGA AACC   TTTAGT ACAT  AGGT  GTGAAAC       
ATTAATCT    C           A  A T     A     A       C             C    TAC      T    AC    TG       ACACCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020992

TTCTAATTAGAGTAATGCTAGTAACACACTCTTTTGAACACACTCTCTAATACTCACTCTTTTATTGGTTTAAATCATTGTGGATCTACACTTTGAAAATTGAACCCACACAAAGTGGTTGGACATACATTGATTTCATCCAACAGAAGAGTGAGTGCTAGAGAGAGTGTTAAAAAGTGAGTATTGCTAGCATTCCTCTTCTAATTA

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