SE2020995

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6197
  • Medicago truncatula
  • SE2020995
  • Mutator
  • M39
  • MtChr5:10605661-10606009
  • TACCAAAAA
  • AGGCTAAAATATGGTTTTAGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCTTGTAAAAAAAAAAAATGTTTTTGGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACCAAAA                       C          C                                AAA                   ATTTGTTGTTTTTGAAAATAGTCCCTCTAGGGATTATTTTCAAAAACAACAAATTTTGCAAGGACCAAAAACTACAAA
        AGGCTAAAATATGGTTTTAGTCC TGCAAATATG CTCGTTTTGGTTTTAGTCCTTGTAAAAAAAAA   TGTTTTTGGTCCCTGCAAA                                                                              
        ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||                                                                               
        TCCGATTTTATACCAAAATCAGG ACGTTTATAC GAGCAAAACCAAAATCAGGGACATTTTTTTTT   ACAAAAACCAGGGATGTTT                                                                              
AAAAACCA                       A          A                                -AA                   AAAAAAACAAAAAATTTTATCAGGGACTGGGGTAAAAACACTACTAAACGTATACACAGTGTACTACTGACTTGGCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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