Plant MITE

SE2020996

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6198
Medicago truncatula
SE2020996
Mutator
M11
MtChr6:17529207-17529398
AATAACAAA
GGGAAATGTTAATGAGTGCCTTCGGGGCAATCTTTAAGGACTATAAATAGCAAGTATTTATAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

AATAACAAA   AAA            C          A        --G    T     -    G     -A      TACATGT      T     GAAA
         GGG   TGTTAATGAGTG CTTCGGGGCA TCTTTAAG   ACTA AAATA GCAA TATTT  TAAAAA       AATCAA GCATT    
         |||   |||||||||||| |||||||||| ||||||||   |||| ||||| |||| |||||  ||||||       |||||| |||||    A
         CCC   ACAATTGCTCAC GAGGCCTTGT AGAAATTC   TGGT TTTAT CGTT ATAAG  ATTTTT       TTAGTT TGTAA    
AAACAATAA   AGA            A          G        GTA    -     T    A     AA      -------      -     AGCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020996

AATAACAAAGGGAAATGTTAATGAGTGCCTTCGGGGCAATCTTTAAGGACTATAAATAGCAAGTATTTATAAAAATACATGTAATCAATGCATTGAAAATCGAAATGTTTGATTTTTTTAAAGAATAATTGCTTATTTTGGTATGCTTAAAGAGTGTTCCGGAGACACTCGTTAACAAGACCCAATAACAAA

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