SE2020997

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6199
  • Medicago truncatula
  • SE2020997
  • Mutator
  • M38
  • MtChr4:10277417-10277815
  • TTAATAATA
  • AGGGGTAATAGCCATTTTGGTCTATGAATTTGTAACGAGTAGCCACAATAGTCCCTCAATATATCGAAATTTCAAAATAGTCCCAGATTGTGCACCTCGTTAGTCAAAATAGTCCTTGACATTAAAATACTTCGTTAATATTGTCATATTAGTCCTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTAATAAT           C           A     T     C      C A      T        A                       A          CTC                      A       AC   G       TG     T    C   -CAATACACTT   -TAT  T  T      CCTTACC
        AGGGGTAATAG CATTTTGGTCT TGAAT TGTAA GAGTAG C CAATAG CCCTCAAT TATCGAAATTTCAAAATAGTCCC GATTGTGCAC   GTTAGTCAAAATAGTCCTTGAC TTAAAAT  TTC TTAATAT  TCATA TAGT CTT           ACT    TG CA ATAAGT       
        ||||||||||| ||||||||||| ||||| ||||| |||||| | |||||| |||||||| ||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||| |||||||  ||| |||||||  ||||| |||| |||           |||    || || ||||||        
        TCCCCATTATC GTAAAACCAGG ACTTA GCATT CTCATC G GTTATC GGGAGTTA ATAGTTTTAAAGTTTTATCAGGG CTAACACGTG   CAATTAGTTTTATCAGGGACTG AATTTTA  AGG GGTTATG  AGTGT ATTA GAA           TGA    AC GT TATTCG       
ATAATAAT           A           G     C     C      A C      C        C                       A          AAA                      C       GT   G       --     T    A   AAATATATCCC   CTTT  T  -      TTCATGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End