SE2031000

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6202
  • Medicago truncatula
  • SE2031000
  • hAT
  • Hat16
  • MtChr8:30922802-30923582
  • ACTCAAAT
  • TTAGGGCTGGCAATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACTCAAA          C     -     TA   C  -    AAAATTCGGAACTTGACTCGGTAATTAGTTCGTTAAACTTGGTTCATGAACCAAACGAGCCGAACTTGAGCTAAAGATTAAGTTCGTTAACTAAATGAGTTGAACTTGAGTTATATATAGTTCGACTCGTTTGATTCACGAACTGACTCGATTATATATATATATAGACACACACACACAAAGCTAGGTAATAGTATTTAACTAATAGTAAAATATAATAGAAGCAATATAAAACAACAATTGTAACAGAGTGGACCTGGATAGTTTTTAGCAATGGAAATATGTTGCTTGTAGTACCATGGTGTTTTAGCAAAGCTGCACTACTTTATTTTTGTCCCACATTGAAAGTAT
       TTAGGGCTGG AATGA ACCGA  CAA TC GAAT                                                                                                                                                                                                                                                                                                                                                               
       |||||||||| ||||| |||||  ||| || ||||                                                                                                                                                                                                                                                                                                                                                                
       AATCCCGACC TTACT AGCTC  AGC TC GCTT                                                                                                                                                                                                                                                                                                                                                               
CAAACTC          T     C     --   -  A    GAACAGACTCGAGCCGAGCTGAGCTATTCTTAACCAAGCCGAGCTTTGAGCTAAGCTCAAATTTTACTTGGAAAAAAACCCGAGCTCAAGCCGAGCAAATTTCAAATGCTCGTTGAGCCAAGCCGAGCAATCCAAGTAAATGAGCTTAGTGTATTAAAATTTTAAATAAAAAAATAAATTTTTACGTATAAAATTTGGATAATTATAAAATTTTTTTTAATATTTATTTATTTTTTGATTTCGTTTCTCCTGAGACGGTAAGGGGTTGGCACTTTATTATTTAACGGTTGAAAGTATAGTTTATCATCGTTTAGGCGAAGAAAATATCTGTTCATAGCAACATAGAGAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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