Plant MITE

SE2021001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6203
Medicago truncatula
SE2021001
Mutator
M2
MtChr3:5594313-5594514
TTTTATAAT
TTATAATGAGAAATGATATTTGTACAACTATTTTTGACAACTTTTGTGACAATT

Secondary structure and sequence

TSD TIR

5'

3'

TT      -T   AAA  A      T           --            TG      -----------------TTCTCTCT    CTCACATTATGTTTTTACTTTCT
  TTATAA  GAG   TG TATTTG ACAACTATTTT  TGACAACTTTTG  ACAATT                         CATA                       
  ||||||  |||   || |||||| |||||||||||  ||||||||||||  ||||||                         ||||                       C
  AATATT  CTC   AC ATAAAC TGTTGGTAAAA  ACTGTTGAAAGC  TGTTGG                         AACT                       
 T      TT   AAC  A      T           AT            TA      TATTTAAACATTTCTTTTTCACCAT    GTGTTTTTAGTTTCGTTATCTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2021001

TTTTATAATGAGAAATGATATTTGTACAACTATTTTTGACAACTTTTGTGACAATTTTCTCTCTCATACTCACATTATGTTTTTACTTTCTCTCTCTATTGCTTTGATTTTTGTGTCAATACCACTTTTTCTTTACAAATTTATGGTTGTATCGAAAGTTGTCATAAAAATGGTTGTTCAAATAACACAACTCTTTTATAAT

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